Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs74823880 | chr5:93968615 | T/C | 4.34E-5 | 405 | 14.8 | 17.73 | 9.8 | KM Plot |
| LGG | rs74828124 | chr8:17523473 | C/T | 4.29E-14 | 407 | 15.15 | 17.2 | 2.53 | KM Plot |
| LGG | rs74838364 | chr4:84428789 | A/G | 1.11E-15 | 397 | 14.85 | 18.13 | 5.17 | KM Plot |
| LGG | rs74844307 | chr7:56045356 | A/G | 1.58E-10 | 406 | 15.32 | 15.93 | 7.8 | KM Plot |
| LGG | rs75033518 | chr13:48572587 | T/C | 1.25E-5 | 406 | 15.37 | 15.22 | 4.17 | KM Plot |
| LGG | rs75123567 | chr4:47637694 | C/A | 2.87E-6 | 405 | 14.57 | 16.47 | 13.87 | KM Plot |
| LGG | rs7513371 | chr1:153647322 | C/T | 8.88E-16 | 401 | 15.67 | 11.7 | 2.63 | KM Plot |
| LGG | rs75163594 | chr3:153675606 | C/T | 0 | 397 | 15.17 | 18.7 | 0.23 | KM Plot |
| LGG | rs7517801 | chr1:154015682 | G/A | 2.44E-15 | 399 | 15.63 | 13.63 | 5.4 | KM Plot |
| LGG | rs75276564 | chr7:56043978 | C/T | 1.58E-10 | 406 | 15.32 | 15.93 | 7.8 | KM Plot |
| LGG | rs75279161 | chr10:81685783 | A/G | 2.13E-5 | 406 | 15.3 | 14.77 | 21.82 | KM Plot |
| LGG | rs7530576 | chr1:200630818 | A/C | 3.38E-5 | 407 | 8.8 | 9.07 | 15.7 | KM Plot |
| LGG | rs7535159 | chr1:201112397 | C/T | 7.74E-6 | 407 | 15.25 | 15.63 | 9.28 | KM Plot |
| LGG | rs75374481 | chr2:17901361 | C/T | 1.44E-8 | 406 | 15.3 | 15.67 | 7.33 | KM Plot |
| LGG | rs7538073 | chr1:201122281 | C/T | 4.84E-5 | 398 | 9.28 | 16 | 15.25 | KM Plot |